ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCCGTCCTAAAAT miRNA* TTTAAAACGGAGAAAGTATTA mismatches: 4 bulges: 0 |
pre-miRNA
TCTAGTAACAGATACTCCCTCCGTCCTAAAATTCTTGTCTTAGATTTGTCTAGATATGAATATCAAGTATTTAGATACATTCATTTCTAGATAAACCTAA
TACAAGAATTTTAAAACGGAGAAAGTATTATATTTTAT
dot-bracket secondary structure
..........((((((..((((((..((((((((((((.((((.((((((((((.(((((((((.........))))..))))).)))))))))).))))
.))))))))))))..))))))..)))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTAGTAACAGATACTCCCTCCGTCCTAAAATTCTTGTCTTAGATTTGTCTAGATATGAATATCAAGTATTTAGATACATTCATTTCTAGATAAACCTAA
TACAAGAATTTTAAAACGGAGAAAGTATTATATTTTAT
dot-bracket secondary structure
..........((((((..((((((..((((((((((((.((((.((((((((((.(((((((((.........))))..))))).)))))))))).))))
.))))))))))))..))))))..)))))).........
SIMILARITIES| miRBase tae-MIR1122: 0.00000000000003 PMRD hpi-miR1122: 0.000000000000002 microPC miR1133: 0.0004 | UniProt no hits RFAM MIR1122: 2e-59 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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