ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR2019
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGGTCGGCGCTCCACGCGGC miRNA* GCTGGAGCGAGACCCGGA mismatches: 3 bulges: 2 |
pre-miRNA
TCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCGTCGGCGAGCCGGAGGCCGAT
GCCGGTGCAGGGGAGCGAGGAGTACGCGGAGCTGGAGCGAGACCCGGAGAAGGCC
dot-bracket secondary structure
...(((...(((((((..(((((((.((..((((..(((((..((.(((.(((.....))).)))..((((.((..((.((((((.........))))))
))..))...)))).))..)))))..)))).))))))))).)))))))...)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCGTCGGCGAGCCGGAGGCCGAT
GCCGGTGCAGGGGAGCGAGGAGTACGCGGAGCTGGAGCGAGACCCGGAGAAGGCC
dot-bracket secondary structure
...(((...(((((((..(((((((.((..((((..(((((..((.(((.(((.....))).)))..((((.((..((.((((((.........))))))
))..))...)))).))..)))))..)))).))))))))).)))))))...)))..
SIMILARITIES| miRBase no hits PMRD tae-miR2019: 0.000008 microPC no hits | UniProt sp|P29114|LOX1_HORVU: 1e-17 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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