ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACGGAGTGAGTATT miRNA* TGCTCCCTCCGTCCTAAACAA mismatches: 3 bulges: 0 |
pre-miRNA
TTCCATGTATATATGCTCCCTCCGTCCTAAACAAGTGTCACTCCTTAGTACTAAATTTACGACACTTATTTTGGGACGGAGTGAGTATTTACTTAACGT
dot-bracket secondary structure
......(((...((((((.((((((((((((.(((((((.....................)))))))..)))))))))))).)))))).))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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TTCCATGTATATATGCTCCCTCCGTCCTAAACAAGTGTCACTCCTTAGTACTAAATTTACGACACTTATTTTGGGACGGAGTGAGTATTTACTTAACGT
dot-bracket secondary structure
......(((...((((((.((((((((((((.(((((((.....................)))))))..)))))))))))).)))))).))).......
SIMILARITIES| miRBase no hits PMRD osa-miRf10229-akr: 0.0000003 microPC miR1439: 0.000005 | UniProt no hits RFAM MIR1122: 0.000000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
