ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGGACGGAGGGAGTACTG miRNA* ACTCCCTCCATCAAAGAG mismatches: 4 bulges: 1 |
pre-miRNA
AATGTACTACTCCCTCCATCAAAGAGCTTGAGACAATTATTTTGGGACGGAGGGAGTACTGTATAT
dot-bracket secondary structure
.((((((((((((((((.((.((((..(((...)))...))))..)).))))))))))..))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
AATGTACTACTCCCTCCATCAAAGAGCTTGAGACAATTATTTTGGGACGGAGGGAGTACTGTATAT
dot-bracket secondary structure
.((((((((((((((((.((.((((..(((...)))...))))..)).))))))))))..))))))
SIMILARITIES| miRBase osa-MIR1862e: 0.00001 PMRD osa-miRf10099-akr: 0.000003 microPC miR1439: 0.00000005 | UniProt no hits RFAM MIR1122: 0.0000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
