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ABOUT THIS RECORD
ID:
MNEST001217
species:
Hordeum vulgare
miRNA family:
MIR1120
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTCCCTCCGTCCCAAAATTC
miRNA*
ATTTTTGGGACGGAGGGAGTAT
mismatches:
1
bulges:
1
View larger
pre-miRNA
GTTCTGCATTTTCCTTCCATGAGTATATGTTCATAG
CTTCCCTCCGTCCCAAAATTC
TTGTCTTAAGTTTGTCCAAAAATAGATGTATCTAAATACTAAA
ACGTGACTAGATACATTCATATCTAGACAAATCTAAGACAAGA
ATTTTTGGGACGGAGGGAGTAT
GTATCAAATGTTCTTTGGGGCAATAACAGAA
dot-bracket secondary structure
.(((((.(((.((((.....((((((.((..((((.
.((((((((((((((((((((
((((((((.(((((((.....((.((((((((((..(((....
..)))..)))))))))).)).....))))))).))))))))))
).))))))))))))))))))))
)...)).))))))...)))).)))..)))))
SIMILARITIES
miRBase
tae-MIR1122
:
8e-25
PMRD
tae-miR1122
:
8e-25
microPC
miR1122
:
0.00001
UniProt
no hits
RFAM
MIR1122: 3e-49
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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