ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCCGAAATA miRNA* TTTCCGGACGGAAGGAGTACT mismatches: 2 bulges: 0 |
pre-miRNA
ATGCTGAGTGACTACATGTACTACTCCCTCCGTCCCGAAATACTTGTCCTAGAAATGAATGTATCTAGACTTATTTTAGTTATAGATACAACCATTTTAT
TCATTTCTAAGACAAGTATTTCCGGACGGAAGGAGTACTACTTTTGGTCTTCTTGTT
dot-bracket secondary structure
.....(((.(((((...(((.((((((.(((((((.((((((((((((.((((((((((((((((((((((......)))).)))))))).........)
))))))))).)))))))))))).))))))).)))))).)))...)))))..)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGCTGAGTGACTACATGTACTACTCCCTCCGTCCCGAAATACTTGTCCTAGAAATGAATGTATCTAGACTTATTTTAGTTATAGATACAACCATTTTAT
TCATTTCTAAGACAAGTATTTCCGGACGGAAGGAGTACTACTTTTGGTCTTCTTGTT
dot-bracket secondary structure
.....(((.(((((...(((.((((((.(((((((.((((((((((((.((((((((((((((((((((((......)))).)))))))).........)
))))))))).)))))))))))).))))))).)))))).)))...)))))..)))...
SIMILARITIES| miRBase tae-MIR1135: 0.0000000000005 PMRD ata-miR1122: 6e-19 microPC miR1128: 4e-32 | UniProt no hits RFAM MIR1122: 3e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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