ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR2033
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTTCTTTACGGAGGGAGTA miRNA* CTCCCTCCATAAAGAAATAGA mismatches: 1 bulges: 0 |
pre-miRNA
AGTAACTTTGTACTCCCTCCATAAAGAAATAGAAGAGCGTTTAGATCACCAAAAGTAGTCATCTAAACGCCCTTATATTTCTTTACGGAGGGAGTACTAC
GCTTG
dot-bracket secondary structure
.........(((((((((((.((((((((((.(((.((((((((((.((........)).)))))))))).))).)))))))))).)))))))))))...
.....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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AGTAACTTTGTACTCCCTCCATAAAGAAATAGAAGAGCGTTTAGATCACCAAAAGTAGTCATCTAAACGCCCTTATATTTCTTTACGGAGGGAGTACTAC
GCTTG
dot-bracket secondary structure
.........(((((((((((.((((((((((.(((.((((((((((.((........)).)))))))))).))).)))))))))).)))))))))))...
.....
SIMILARITIES| miRBase tae-MIR1121: 1e-19 PMRD tae-miR1121: 1e-19 microPC miR1121: 0.000005 | UniProt no hits RFAM MIR1122: 7e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
