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ABOUT THIS RECORD
ID:
MNEST001225
species:
Hordeum vulgare
miRNA family:
MIR1128
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTTACTCCCTCCGTCCGAAA
miRNA*
CTAGACGGAGGGATTACATT
mismatches:
5
bulges:
1
View larger
pre-miRNA
TTGAGATTGGTTGATTGT
TGTTACTCCCTCCGTCCGAAA
TTACTTGTCCGGGAGATGGATGTATCTAGGTGTATTTTAGTTCTAGATAAATTCATTTATA
TTCAATTTTTGAGGCAAGTAATT
CTAGACGGAGGGATTACATT
ATGGTTATAAGGTGG
dot-bracket secondary structure
.....(((...(((((((
(((...((((((((((...((
(((((((((((((((((((((.((((((((..((...))..)))))))).)))))))....
......))))).)))))))))))
...))))))))))..)))..
)))))))...)))..
SIMILARITIES
miRBase
tae-MIR1135
:
0.0000000001
PMRD
ata-miR1122
:
2e-18
microPC
miR1135
:
0.00000000000003
UniProt
no hits
RFAM
MIR1122: 4e-17
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
degradome data
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