ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTAGTACTCCCTCCGTCCGG miRNA* GAACAGAGGGAGTATTACTCA mismatches: 4 bulges: 0 |
pre-miRNA
TGAAATTCTTAGCTAGTACTCCCTCCGTCCGGAATGGTGCTAGATACATCCGTTTGAGCGTCAAGTAATTCCGAACAGAGGGAGTATTACTCATCCATTC
A
dot-bracket secondary structure
.............((((((((((((.((.((((((..((((.(((...((.....))..))).)))))))))).)).))))))))))))...........
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAAATTCTTAGCTAGTACTCCCTCCGTCCGGAATGGTGCTAGATACATCCGTTTGAGCGTCAAGTAATTCCGAACAGAGGGAGTATTACTCATCCATTC
A
dot-bracket secondary structure
.............((((((((((((.((.((((((..((((.(((...((.....))..))).)))))))))).)).))))))))))))...........
.
SIMILARITIES| miRBase tae-MIR1135: 0.000005 PMRD tae-miR1135: 0.000005 microPC miR1135: 0.00008 | UniProt no hits RFAM MIR1122: 0.00000009 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
