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ABOUT THIS RECORD
ID:
MNEST001228
species:
Hordeum vulgare
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCTCAAAATA
miRNA*
TTTTTGGACGGAGGGAGTACT
mismatches:
2
bulges:
0
View larger
pre-miRNA
CTGTATAATCGTATAC
TACTCCCTCCGTCTCAAAATA
AGTGTCTTAAGCTTAGTACAAATTTGTACTAGAGCTTATACAAAGTTGAGACAGTTA
TTTTTG
GACGGAGGGAGTACT
GCTTAATGAAGAC
dot-bracket secondary structure
..(((((....)))))
.(((((((((((((.((((((
(.((((((((((((((((((....))))))).)))))..........)))))).)))
)))).)
))))))))))))...
.(((....)))..
SIMILARITIES
miRBase
far-MIR1122
:
0.00000003
PMRD
hpr-miR1120
:
0.000006
microPC
miR1439
:
1e-28
UniProt
no hits
RFAM
MIR1122: 2e-30
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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