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ABOUT THIS RECORD
ID:
MNEST001230
species:
Hordeum vulgare
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCACAGGCTTTCTTGAACTG
miRNA*
GTTCAAGAAAGTCCTTGGAAA
mismatches:
0
bulges:
2
View larger
pre-miRNA
GCGGCCATGCTC
TCCACAGGCTTTCTTGAACTG
TCAACTCGCGCGCGCCAGCCATCCATGGCCTGCTGCTCAATTCAACCGCCTGCTGTCGCATATTGAG
ATCCGATCCATTGTTCAATCCATGGNATCTTTGCCTTGCCTTGCCTTGTTGATG
GTTCAAGAAAGTCCTTGGAAA
ACATGCCCG
dot-bracket secondary structure
.(((.((((...
((((.((((((((((((((((
(((((..(((.(((.(((..(.((((((..(((.((.((...........))..)).))).((((((
.............))))))))))))..)..)))...)))..)))...)))))))
))))))))))).)))))))..
.)))).)))
SIMILARITIES
miRBase
far-MIR396
:
1e-17
PMRD
hvu-miR396
:
3e-33
microPC
miR396
:
0.00000000000001
UniProt
no hits
RFAM
MIR396: 0.00000000001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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