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ABOUT THIS RECORD

ID: MNEST001230
species: Hordeum vulgare
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCACAGGCTTTCTTGAACTG

miRNA*
 GTTCAAGAAAGTCCTTGGAAA

mismatches: 0
bulges: 2
View larger
pre-miRNA
 GCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTCAACTCGCGCGCGCCAGCCATCCATGGCCTGCTGCTCAATTCAACCGCCTGCTGTCGCATATTGAG
ATCCGATCCATTGTTCAATCCATGGNATCTTTGCCTTGCCTTGCCTTGTTGATGGTTCAAGAAAGTCCTTGGAAAACATGCCCG

dot-bracket secondary structure
.(((.((((...((((.(((((((((((((((((((((..(((.(((.(((..(.((((((..(((.((.((...........))..)).))).((((((
.............))))))))))))..)..)))...)))..)))...)))))))))))))))))).)))))))...)))).)))


SIMILARITIES
miRBase far-MIR396: 1e-17

PMRD hvu-miR396: 3e-33

microPC miR396: 0.00000000000001		UniProt no hits

RFAM MIR396: 0.00000000001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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