ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATGGGACAGAGGGAGTACA miRNA* TACCCCCTCCATCTCAAAATA mismatches: 5 bulges: 0 |
pre-miRNA
GTTACTATAATATACCCCCTCCATCTCAAAATATAAGTGTTTTTTAACACTAGTGTAGTGTCAAAAACGCTCTTATATTATGGGACAGAGGGAGTACATA
CCATGCT
dot-bracket secondary structure
.........((.(((.(((((..(((((.(((((((((((((((..((((((...)))))).)))))))))..)))))).)))))..))))).))).)).
.......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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GTTACTATAATATACCCCCTCCATCTCAAAATATAAGTGTTTTTTAACACTAGTGTAGTGTCAAAAACGCTCTTATATTATGGGACAGAGGGAGTACATA
CCATGCT
dot-bracket secondary structure
.........((.(((.(((((..(((((.(((((((((((((((..((((((...)))))).)))))))))..)))))).)))))..))))).))).)).
.......
SIMILARITIES| miRBase tae-MIR1120: 0.000000001 PMRD tae-miR1120: 0.000000001 microPC miR1439: 0.000000000000006 | UniProt no hits RFAM MIR1122: 4e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
