ABOUT THIS RECORDspecies: Hordeum vulgare subsp. spontaneum
miRNA family: MIR1436
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATTTTGGGACGGAGGGAGT miRNA* TCCCTCCCGTGCCCAAAATAAGT mismatches: 0 bulges: 2 |
pre-miRNA
GTTTATTGTATACTCCCTCCCGTGCCCAAAATAAGTGAGTCACTTATTTTGGGACGGAGGGAGTATTAGATTGT
dot-bracket secondary structure
....(((..(((((((((((.((.(((((((((((((...))))))))))))))))))))))))))..)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTTATTGTATACTCCCTCCCGTGCCCAAAATAAGTGAGTCACTTATTTTGGGACGGAGGGAGTATTAGATTGT
dot-bracket secondary structure
....(((..(((((((((((.((.(((((((((((((...))))))))))))))))))))))))))..)))...
SIMILARITIES| miRBase osa-MIR1862e: 0.000003 PMRD hpr-miR1120: 0.00000000006 microPC miR1439: 4e-27 | UniProt no hits RFAM MIR1122: 0.000000001 | most similar mature miRNAs |
Identical with: miR1439 from microPC (MNEST046048) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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