ABOUT THIS RECORDspecies: Humulus lupulus
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Humulus lupulus Humulus Cannabaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCTCTTCCG miRNA* GGTCAGGAAGAAGAAGAAGTA mismatches: 5 bulges: 0 |
pre-miRNA
CCTCAAGCTCTCCTCTTCCTCTTCCTCTTCCGTTGCCACCCCTTTTCTCCATGGCTCCACTCCCCTCTCTCTCCTCTCAAAACCCTCTTCCGCTCTCACC
AGTCCAACTCTGGCGCCGCCCTCTTTCCTTCCCCCAATCCGGGCCATGAGATCAATGCGGGGACGCGTCGTTTGCTCCACCAACGATAAGACCGTGGCCG
TGGAGGTGGTGCGTTTAGCTCCTCATCCCAAGTACAAGAGGCGGGTCAGGAAGAAGAAGAAGTACCAGGCAC
dot-bracket secondary structure
.............(((((.(((((((..((((..((((((.......(((((((((.........................((..((((.(((((((..(
(......(((((((.(((.....................))))))).))).....))..)))).)))(((((.........))))).))))..)))))))
))))))))))((.....)).((((.............))))))))..))))))).))))).((.....))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCTCAAGCTCTCCTCTTCCTCTTCCTCTTCCGTTGCCACCCCTTTTCTCCATGGCTCCACTCCCCTCTCTCTCCTCTCAAAACCCTCTTCCGCTCTCACC
AGTCCAACTCTGGCGCCGCCCTCTTTCCTTCCCCCAATCCGGGCCATGAGATCAATGCGGGGACGCGTCGTTTGCTCCACCAACGATAAGACCGTGGCCG
TGGAGGTGGTGCGTTTAGCTCCTCATCCCAAGTACAAGAGGCGGGTCAGGAAGAAGAAGAAGTACCAGGCAC
dot-bracket secondary structure
.............(((((.(((((((..((((..((((((.......(((((((((.........................((..((((.(((((((..(
(......(((((((.(((.....................))))))).))).....))..)))).)))(((((.........))))).))))..)))))))
))))))))))((.....)).((((.............))))))))..))))))).))))).((.....))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P16180|RR17_ARATH: 0.0000000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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