ABOUT THIS RECORDspecies: Jatropha curcas
miRNA family: miR167h
source: miRNEST
Taxonomy by NCBI:
Jatropha curcas Jatropha Jatropheae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATCATGTGGCAGTTTCACCT miRNA* TTGAAGCTGCCAGCATGATCTG mismatches: 2 bulges: 1 |
pre-miRNA
AGTACCTCTAGTAGTTGAAGCTGCCAGCATGATCTGAGCTTTCCTTAATACTCATCAATCCTACCCTATCCAGAGAGGAGGGATTATATCATGTGGCAGTT
TCACCTGTTAATGCTA
dot-bracket secondary structure
).......((((((.(((((((((((.((((((.(((.((((((((............................)))))))).))).))))))))))))))
))).))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGTACCTCTAGTAGTTGAAGCTGCCAGCATGATCTGAGCTTTCCTTAATACTCATCAATCCTACCCTATCCAGAGAGGAGGGATTATATCATGTGGCAGTT
TCACCTGTTAATGCTA
dot-bracket secondary structure
).......((((((.(((((((((((.((((((.(((.((((((((............................)))))))).))).))))))))))))))
))).))))))......
SIMILARITIES| miRBase ptc-MIR167e: 6.0E-15 PMRD ptc-miR167e: 6.0E-15 microPC miR167: 2.0E-8 | UniProt no hits RFAM 1MIR167_1: 1.0E-13 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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