ABOUT THIS RECORDspecies: Jatropha curcas
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Jatropha curcas Jatropha Jatropheae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* TATCATGTGGCAGTTTCACC mismatches: 1 bulges: 1 |
pre-miRNA
ATCTCATCGTGTACCTCTAGTAGTTGAAGCTGCCAGCATGATCTGAGCTTTCCTTAATACTCATCAATCCTACCCTATCCAGAGAGGAGGGATTATATCAT
GTGGCAGTTTCACCTGTTAATGCTAGCATGAAAA
dot-bracket secondary structure
).....((((((.....((((((.(((((((((((.((((((.(((.((((((((............................)))))))).))).)))))
)))))))))))).))))))......))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCTCATCGTGTACCTCTAGTAGTTGAAGCTGCCAGCATGATCTGAGCTTTCCTTAATACTCATCAATCCTACCCTATCCAGAGAGGAGGGATTATATCAT
GTGGCAGTTTCACCTGTTAATGCTAGCATGAAAA
dot-bracket secondary structure
).....((((((.....((((((.(((((((((((.((((((.(((.((((((((............................)))))))).))).)))))
)))))))))))).))))))......))))))...
SIMILARITIES| miRBase ptc-MIR167e: 7.0E-15 PMRD ptc-miR167e: 7.0E-15 microPC miR167: 3.0E-8 | UniProt no hits RFAM 1MIR167_1: 1.0E-13 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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