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ABOUT THIS RECORD

ID: MNEST001298
species: Lactuca perennis
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACACATA

mismatches: 2
bulges: 1
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pre-miRNA
 CCATAACTCCATAGGAGTGACACTAAGAACACATATGGTTGAATTGCTATCTCCAGTGTATATTCATATGTTGTCAGTACAAATTTTTGATGCACATACAG
TTGTTTGTGAGACATTGTCGACCATCCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACC

dot-bracket secondary structure
).....(((((.(((.(((((.((.((((((((.((((((((..((...(((((((........((..((((((((...(((....))).)).))).))).
.)).))).))))))...)))))))).....)))))))).))))))).))).)))))....


SIMILARITIES
miRBase vvi-MIR398a: 8.0E-9

PMRD vvi-miR398a: 8.0E-9

microPC miR398: 1.0E-75		UniProt no hits

RFAM 8MIR398: 2.0E-7		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST046357)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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