ABOUT THIS RECORDspecies: Lactuca saligna
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
ACGAGTTGAAGTAGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTA
TAGGCTTTGTGGCTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTGGATTGAAGGGAGCTCTACACCTCCTCT
dot-bracket secondary structure
..(((.....((((((((((((..(((((((.((((((((.(((.((((..((.((.((.(((((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).))))).)).)).))..))))..))).)))))))).)))))))..)))))))))))).....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACGAGTTGAAGTAGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTA
TAGGCTTTGTGGCTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTGGATTGAAGGGAGCTCTACACCTCCTCT
dot-bracket secondary structure
..(((.....((((((((((((..(((((((.((((((((.(((.((((..((.((.((.(((((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).))))).)).)).))..))))..))).)))))))).)))))))..)))))))))))).....))).
SIMILARITIES| miRBase vvi-MIR159c: 0.00000000004 PMRD vvi-miR159c: 0.00000000004 microPC miR159: 2e-90 | UniProt no hits RFAM MIR159: 0.0000000007 | most similar mature miRNAs |
Identical with: miR159 from microPC (MNEST045187) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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