ABOUT THIS RECORDspecies: Lactuca saligna
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* CGGCATCTTCAAGATTCACA mismatches: 2 bulges: 0 |
pre-miRNA
CCTCTTAAACCACGAAAGTCATTGATTACTGGTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTCAATGGGTAATGAGA
ATCTTGATGATGCTGCATCAGAAATCAATCGACTACATTCCATTTAC
dot-bracket secondary structure
)...............(((((((((((.(((((((((((((.(((((((((.((((((.....((((..((.....))...))))......))).))).))
))))))).))))))))))))).))))))).)))).............
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTCTTAAACCACGAAAGTCATTGATTACTGGTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTCAATGGGTAATGAGA
ATCTTGATGATGCTGCATCAGAAATCAATCGACTACATTCCATTTAC
dot-bracket secondary structure
)...............(((((((((((.(((((((((((((.(((((((((.((((((.....((((..((.....))...))))......))).))).))
))))))).))))))))))))).))))))).)))).............
SIMILARITIES| miRBase osa-MIR172d: 3.0E-8 PMRD sbi-miR172d: 3.0E-8 microPC miR172: 1.0E-44 | UniProt no hits RFAM 2mir-172: 1.0E-7 | most similar mature miRNAs |
Identical with: miR172 from microPC (MNEST044830) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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