ABOUT THIS RECORDspecies: Lactuca saligna
miRNA family: MIR477
source: miRNEST
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTCCCTCAAGGGCTTCTA miRNA* GAGGCTTGCGAGTGAGATCA mismatches: 4 bulges: 0 |
pre-miRNA
TTTTCCAGGCATTGATTGCTTGCTCTCCCTCAAGGGCTTCTAGCATTGACCCTACATATATGTAATGCCTCTTATTCTTATAATATAAGACTAAGAGCAT
GTGTTTGGAGGTCTTGCTAGAGGCTTGCGAGTGAGATCAGATACTCAATGTCTTGTTG
dot-bracket secondary structure
......(((((((((.((.(((.((((.(((..((((((((((((..(((((((.((((((((......(((((.((((((...)))))).)))))))))
)))).))).)))).))))))))))))..))).)))).))).)).))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTCCAGGCATTGATTGCTTGCTCTCCCTCAAGGGCTTCTAGCATTGACCCTACATATATGTAATGCCTCTTATTCTTATAATATAAGACTAAGAGCAT
GTGTTTGGAGGTCTTGCTAGAGGCTTGCGAGTGAGATCAGATACTCAATGTCTTGTTG
dot-bracket secondary structure
......(((((((((.((.(((.((((.(((..((((((((((((..(((((((.((((((((......(((((.((((((...)))))).)))))))))
)))).))).)))).))))))))))))..))).)))).))).)).))))))))).....
SIMILARITIES| miRBase vvi-MIR447b: 0.0005 PMRD aqc-miR477g: 0.0005 microPC no hits | UniProt no hits RFAM MIR473: 0.0006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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