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ABOUT THIS RECORD

ID: MNEST001316
species: Lactuca sativa
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGAGTTGCCCTG

miRNA*
 GGGCGTCTCTCCTCTGGCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 ACGGGGAAGCGAACTAATTGCAGGGCGTCTCTCCTCTGGCAGAAAACCCTAATTAATTTTCCCATTGTCGAATGATTTTGGATATATGGAAGATTTAGAAC
GCTATTTGCCAAAGGAGAGTTGCCCTGTATCTGGTTTGCTTAATCGAGTCAAGAAA

dot-bracket secondary structure
)(((..((((((((((..(((((((((.(((((((.(((((((...........((((((((...((((.((.....)).))))...))))))))......
....))))))).))))))).)))))))))..))))))))))..)))..........


SIMILARITIES
miRBase vvi-MIR399c: 1.0E-7

PMRD vvi-miR399c: 1.0E-7

microPC miR399: 1.0E-56		UniProt no hits

RFAM 9mir-399: 0.0001		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046085)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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