ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIRf229
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGAGAGTTGCCCTGTAACTG miRNA* GTTAAAGGACTACTTTCTATT mismatches: 5 bulges: 0 |
pre-miRNA
GATCAATCATCAAGCGAAATCAGTTAAAGGACTACTTTCTATTGGCATATTTATTTAAAATATGTAATCCATGATTATTAGTCTTATTATGATATGCCAA
AGGAGAGTTGCCCTGTAACTGTTTATTGCTTATATGTTAT
dot-bracket secondary structure
...........((((((...((((((.(((...(((((((.((((((((((....(((.((..((((((...))))))..)).)))....))))))))))
.)))))))...))).))))))....)))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATCAATCATCAAGCGAAATCAGTTAAAGGACTACTTTCTATTGGCATATTTATTTAAAATATGTAATCCATGATTATTAGTCTTATTATGATATGCCAA
AGGAGAGTTGCCCTGTAACTGTTTATTGCTTATATGTTAT
dot-bracket secondary structure
...........((((((...((((((.(((...(((((((.((((((((((....(((.((..((((((...))))))..)).)))....))))))))))
.)))))))...))).))))))....)))))).........
SIMILARITIES| miRBase csi-MIR399d: 0.000000007 PMRD zma-miR399e: 0.0000004 microPC miR399: 4e-44 | UniProt no hits RFAM mir-399: 0.000008 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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