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ABOUT THIS RECORD

ID: MNEST001322
species: Lactuca sativa
miRNA family: MIRf592
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCAAGTTGTCCTAGGCTACA

miRNA*
 CAGCCAAGGATGACTTGCCGG

mismatches: 2
bulges: 0
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pre-miRNA
 TATGTGTAGTGCAGCCAAGGATGACTTGCCGGAGATATTCTTAGGTCTTTGTTTATCCATCTTTGAGTTCTTTTTCTATTTCTTAAAACCCCCCAAAAAAA
TCATACTCAAAAGGTCACGAAGGCACGCATTTGAAAATTTATATATCACCCATTAATCGTAAAGTTTATTAAAGATTCATAAGCTCCGGTTGGTTAACTG
CATAAACTATTTATTGGCCTGTTTCGTTATTTTCGTGTATACGTACATAGGATAAGAAAGAAAGCATAACGTCGGCAAGTTGTCCTAGGCTACATATCTA
T

dot-bracket secondary structure
).......(((.((((.(((((((((((((((...(((.(((...(((((.(((((((...(((((((...((((......................))))
....))))))).(((.((((((.((.((...((((..(((((.((......((((((((...(((((((.((...)).))))))).))))))))....))
.)))))...))))...)).)))))))).)))...(((((....))))).))))))))))))))).)))...))))))))))))))).)))).))).....
.


SIMILARITIES
miRBase vvi-MIR169c: 6.0E-8

PMRD vvi-miR169c: 6.0E-8

microPC miR169: 0.0002		UniProt no hits

RFAM 2MIR169_2: 8.0E-8		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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