ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGACAGAAGAGAGTGAGCAC miRNA* GCTCACCCTCTGTCTGTCACCC mismatches: 1 bulges: 1 |
pre-miRNA
AAGGGTGGTGGTGACAGAAGAGAGTGAGCACCCATGGTCTTTCTCGCAAATAGTGCGCTTTCATGTGCTTGAAGCTATGCGTGCTCACCCTCTGTCTGTC
ACCCCTGCTAT
dot-bracket secondary structure
...(((((.(((((((((((((.((((((((.((((((..(((..(((....(((......))).)))..))))))))).)))))))).)))).))))))
))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGGGTGGTGGTGACAGAAGAGAGTGAGCACCCATGGTCTTTCTCGCAAATAGTGCGCTTTCATGTGCTTGAAGCTATGCGTGCTCACCCTCTGTCTGTC
ACCCCTGCTAT
dot-bracket secondary structure
...(((((.(((((((((((((.((((((((.((((((..(((..(((....(((......))).)))..))))))))).)))))))).)))).))))))
))).)))))..
SIMILARITIES| miRBase aly-MIR156f: 0.000000001 PMRD ptc-miRf10647-akr: 0.000000006 microPC miR156: 2e-45 | UniProt no hits RFAM mir-156: 0.000002 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST046706) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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