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ABOUT THIS RECORD

ID: MNEST001325
species: Lactuca sativa
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACTGCTCTATCTGTCACC

mismatches: 1
bulges: 2
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pre-miRNA
 CTTGTGGGGAGAGAAATAGGGCTGACAGAAGAGAGTGAGCACACAAAGGCTAATTGTACCGAAGTTACTTGTATGATTGTTTTGGGTGCTCACTGCTCTAT
CTGTCACCTTCATTCTTTTGCTTCTC

dot-bracket secondary structure
)....((.(((((((..((((.((((((((((((((((((((...(((((.((((((((...........)))))))))))))..))))))))).)))).)
))))))))))..))))))).))....


SIMILARITIES
miRBase ath-MIR156c: 2.0E-9

PMRD ath-miR156c: 2.0E-9

microPC miR156: 6.0E-43		UniProt no hits

RFAM 6mir-156: 3.0E-8		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST046574)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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