ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIRf564
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCATCATCAAGATTCACGT miRNA* GAGAATCTTGATGATGCTGCA mismatches: 1 bulges: 0 |
pre-miRNA
CCTAAAGTCGTTGTTTTCCGGCGTGGCATCATCAAGATTCACGTACAAAAGCAAAAAGCAAAAGCTTTTTGAGGATGAGAATCTTGATGATGCTGCATCG
GCAATAAATGGCTGTGC
dot-bracket secondary structure
.....(((((((..((.((((.((((((((((((((((((.(((.......((((((((....))))))))...))).)))))))))))))))))).)))
).))..)))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTAAAGTCGTTGTTTTCCGGCGTGGCATCATCAAGATTCACGTACAAAAGCAAAAAGCAAAAGCTTTTTGAGGATGAGAATCTTGATGATGCTGCATCG
GCAATAAATGGCTGTGC
dot-bracket secondary structure
.....(((((((..((.((((.((((((((((((((((((.(((.......((((((((....))))))))...))).)))))))))))))))))).)))
).))..)))))))....
SIMILARITIES| miRBase vvi-MIR172a: 0.0000000000004 PMRD vvi-miR172a: 0.0000000000004 microPC miR172: 0.000001 | UniProt no hits RFAM mir-172: 0.0000000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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