ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCTGTTCAATAAAGCTGTGG miRNA* ACAGCTTTCTTGAACTGCATG mismatches: 2 bulges: 0 |
pre-miRNA
GAATGGTGCTCTTTCTGTTCTTCCACAGCTTTCTTGAACTGCATGGTTCAACATTGATCTATTCGAATCTTTGCTGTTCAATAAAGCTGTGGGAAGATAG
AGAGAGGATCAAC
dot-bracket secondary structure
...((((.(((((((((((.((((((((((((.((((((.(((.(((((...............)))))..))).)))))).)))))))))))).)))))
)))))).))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAATGGTGCTCTTTCTGTTCTTCCACAGCTTTCTTGAACTGCATGGTTCAACATTGATCTATTCGAATCTTTGCTGTTCAATAAAGCTGTGGGAAGATAG
AGAGAGGATCAAC
dot-bracket secondary structure
...((((.(((((((((((.((((((((((((.((((((.(((.(((((...............)))))..))).)))))).)))))))))))).)))))
)))))).))))..
SIMILARITIES| miRBase lja-MIR396: 0.000000006 PMRD lja-miR396: 0.000000006 microPC miR396: 2e-36 | UniProt no hits RFAM MIR396: 0.0000001 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST046137) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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