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ABOUT THIS RECORD

ID: MNEST001332
species: Lactuca sativa
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGGGGTGAAGGGAGCTCCT

miRNA*
 GAGCTCTCTATCGCCTCGACCC

mismatches: 2
bulges: 1
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pre-miRNA
 ATACTTATGGTTGGAGCTCTCTATCGCCTCGACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCTTGTAGGTGCACCAATG
TTGTTGTAGTGTGCATTCTAAGGTTAGCATGAAGGTGGAGCCATGGTTTGATCATCTTTTTGGGATTGGGGTGAAGGGAGCTCCTCCCATGATCA

dot-bracket secondary structure
....((((((..((((((((((.(((((((((.((((((((((....(((((.......((((((((.((((((((((...((((...(((((((((((.
..))))....)))))))...))))...)))))))).))))))))))..))))).)))))))))).)))))))))))))))))))..))))))...


SIMILARITIES
miRBase ptc-MIR159e: 0.000003

PMRD ptc-miR159e: 0.000003

microPC miR159: 3e-95		UniProt no hits

RFAM MIR159: 0.00005		most similar mature miRNAs

Identical with: miR319 from microPC (MNEST046103)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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