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ABOUT THIS RECORD

ID: MNEST001333
species: Lactuca sativa
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACACATA

mismatches: 2
bulges: 1
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pre-miRNA
 CCCACAAGGGCATAACTCCATAGGAGTGACACTAAGAACACATATGGTTGAATTGCTATCTCCACTGCATATTCATATGTTGTACAGTACAAATTTTCGA
TGCACATACAGTTGTTTGTGAGACATTGTGTGAACCATCCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACCCTGTTTCCTT

dot-bracket secondary structure
......((((.....(((((.(((.(((((.((.((((((((.((((.((...(((..........)))..((((((((.(((....(((((((......
((......))...)))))))..))).)))))))).)).)))).)))))))).))))))).))).)))))..))))........


SIMILARITIES
miRBase vvi-MIR398a: 0.00000001

PMRD vvi-miR398a: 0.00000001

microPC miR398: 2e-77		UniProt no hits

RFAM MIR398: 0.0000002		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST045602)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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