ABOUT THIS RECORDspecies: Lactuca serriola
miRNA family: MIRf168
source: miRNEST
Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTAGCCAAGGATGACTTG miRNA* GTCTTCTTGGCTAACTTGAC mismatches: 2 bulges: 2 |
pre-miRNA
AGGGAAAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGA
CCTTTGTTAGACTGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTAATTTCATGTTAGATCTCCTTTTCTA
dot-bracket secondary structure
)........(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).
))))))..)))..)))...)))))))))))))))))).))).))))..)).))))))....)))))).)).)).)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGGAAAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGA
CCTTTGTTAGACTGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTAATTTCATGTTAGATCTCCTTTTCTA
dot-bracket secondary structure
)........(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).
))))))..)))..)))...)))))))))))))))))).))).))))..)).))))))....)))))).)).)).)))))))..
SIMILARITIES| miRBase ptc-MIR169k: 2.0E-9 PMRD ptc-miR169k: 2.0E-9 microPC miR169: 2.0E-47 | UniProt no hits RFAM 5MIR169_5: 4.0E-8 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST044808) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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