ABOUT THIS RECORDspecies: Lactuca virosa
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGAATGGCTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
TTGTTGGAGATGGTAACGTGATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAAT
ATCATGAACTACTGTTAATTTGT
dot-bracket secondary structure
).......(((((((..((.((((((((((.(((((((((((((((.(((...(((..((....))....)))...))).))))))))))))))).)))))
)))))..))))))))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGTTGGAGATGGTAACGTGATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAAT
ATCATGAACTACTGTTAATTTGT
dot-bracket secondary structure
).......(((((((..((.((((((((((.(((((((((((((((.(((...(((..((....))....)))...))).))))))))))))))).)))))
)))))..))))))))).......
SIMILARITIES| miRBase tcc-MIR171f: 1.0E-10 PMRD vvi-miR171i: 4.0E-10 microPC miR171: 4.0E-44 | UniProt no hits RFAM 1MIR171_1: 7.0E-9 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045103) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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