ABOUT THIS RECORDspecies: Lactuca virosa
miRNA family: miR3948
source: miRNEST
Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGAGTGGGAGTGGGAGTGGG miRNA* TGTATCTTACTTACACTTGGGC mismatches: 4 bulges: 1 |
pre-miRNA
CTACTGGTGAAATGGTATTATAGGAGTGGGAGTGGGAGTGGGAGGGTGAAGGATTCTGATTCTTGTATCTTACTTACACTTGGGCGTCAGGAGGTTCTAC
TGA
dot-bracket secondary structure
.(((((......)))))......(((((.((((((((.((((((...(((...)))...))))))..)))))))).))))).....((((.........)
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTACTGGTGAAATGGTATTATAGGAGTGGGAGTGGGAGTGGGAGGGTGAAGGATTCTGATTCTTGTATCTTACTTACACTTGGGCGTCAGGAGGTTCTAC
TGA
dot-bracket secondary structure
.(((((......)))))......(((((.((((((((.((((((...(((...)))...))))))..)))))))).))))).....((((.........)
)))
SIMILARITIES| miRBase cre-MIR1171: 0.0003 PMRD cre-miR1171: 0.0003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
