ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIR2033
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTTATTTACAGAGGGAGTA miRNA* CTAGCTCTGTAAACAAATATA mismatches: 3 bulges: 0 |
pre-miRNA
CTAATGGCACATCTTAGATATATATGGAACATACTAGCTCTGTAAACAAATATAACAAGTTTTAGGTCACTACTTTAATGACCTAAAACGTCCTATATTTA
TTTACAGAGGGAGTACACAACTATCTCAGCGATGGTAACACACC
dot-bracket secondary structure
)..........(((...........)))...((((..(((((((((.(((((((....(((((((((((.((...)).)))))))))))....))))))).
)))))))))..))))....((((((.....))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTAATGGCACATCTTAGATATATATGGAACATACTAGCTCTGTAAACAAATATAACAAGTTTTAGGTCACTACTTTAATGACCTAAAACGTCCTATATTTA
TTTACAGAGGGAGTACACAACTATCTCAGCGATGGTAACACACC
dot-bracket secondary structure
)..........(((...........)))...((((..(((((((((.(((((((....(((((((((((.((...)).)))))))))))....))))))).
)))))))))..))))....((((((.....))))))........
SIMILARITIES| miRBase tae-MIR1121: 0.0004 PMRD tmo-miR1120: 3.0E-11 microPC no hits | UniProt no hits RFAM 2MIR1122: 6.0E-10 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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