ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGGACGGAGGGAGTACAT miRNA* GTACTCCCTCCGTCCGATAGC mismatches: 3 bulges: 0 |
pre-miRNA
CAAGCACTGCTAACATTCTGCTGGAAAGTTTGGTCGCTGTGGGGTACTCCCTCCGTCCGATAGCTTGCAAAAACGTTCTTATATTATGGGACGGAGGGAGT
ACATTTTACAATGTACAAGGAGTCATGCGTGTTCTGCCAGTTC
dot-bracket secondary structure
)....(((((.((((...(((..((...((((..((.(((((.(((((((((((((((.((((...((......)).......)))).)))))))))))))
))...))))).))..))))...))..)))))))..).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAGCACTGCTAACATTCTGCTGGAAAGTTTGGTCGCTGTGGGGTACTCCCTCCGTCCGATAGCTTGCAAAAACGTTCTTATATTATGGGACGGAGGGAGT
ACATTTTACAATGTACAAGGAGTCATGCGTGTTCTGCCAGTTC
dot-bracket secondary structure
)....(((((.((((...(((..((...((((..((.(((((.(((((((((((((((.((((...((......)).......)))).)))))))))))))
))...))))).))..))))...))..)))))))..).))))..
SIMILARITIES| miRBase tae-MIR1120: 3.0E-11 PMRD tae-miR1120: 3.0E-11 microPC miR1436: 2.0E-9 | UniProt no hits RFAM 2MIR1122: 3.0E-11 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
