ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTTCCATAATAT miRNA* ATTATGGGACGGAGGGAGTAC mismatches: 0 bulges: 0 |
pre-miRNA
CCATAGTTCGTACTCCCTCCGTTCCATAATATAAGAACGTTTTTCAAGCTAACAAGCTTACAAAAATGCTCTTATATTATGGGACGGAGGGAGTACTTGG
TTGT
dot-bracket secondary structure
.........(((((((((((((((((((((((((((.(((((((.(((((....)))))..))))))).)))))))))))))))))))))))))))....
....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCATAGTTCGTACTCCCTCCGTTCCATAATATAAGAACGTTTTTCAAGCTAACAAGCTTACAAAAATGCTCTTATATTATGGGACGGAGGGAGTACTTGG
TTGT
dot-bracket secondary structure
.........(((((((((((((((((((((((((((.(((((((.(((((....)))))..))))))).)))))))))))))))))))))))))))....
....
SIMILARITIES| miRBase tae-MIR1120: 0.00000000002 PMRD tae-miR1120: 0.00000000002 microPC miR1436: 8e-42 | UniProt no hits RFAM MIR1122: 7e-18 | most similar mature miRNAs |
Identical with: miR1436 from microPC (MNEST046744) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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