ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIR1135
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCGACAAGTAATTCCGGAC miRNA* CCGGAAATACTTGTCAGAG mismatches: 1 bulges: 2 |
pre-miRNA
AGGCTGATCGACGTGTACTCCCTACTTATGTACTCTCTCCGTCCGGAAATACTTGTCAGAGAAATGGATGTATCTAGACGTATTTTAGTTCTAGATACAT
TCATTTTTATTCATTTCTGCGACAAGTAATTCCGGACGGAGGGAGTACTAGTAATCCACATTACACTTCTTCACTC
dot-bracket secondary structure
.((.(((..((.(((((.....((((...(((((((((((((((((((.(((((((((((((((((((((((((((((...((....)))))))))))))
)))))))........)))..)))))))).))))))))))))))))))).))))........))))).)).))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGCTGATCGACGTGTACTCCCTACTTATGTACTCTCTCCGTCCGGAAATACTTGTCAGAGAAATGGATGTATCTAGACGTATTTTAGTTCTAGATACAT
TCATTTTTATTCATTTCTGCGACAAGTAATTCCGGACGGAGGGAGTACTAGTAATCCACATTACACTTCTTCACTC
dot-bracket secondary structure
.((.(((..((.(((((.....((((...(((((((((((((((((((.(((((((((((((((((((((((((((((...((....)))))))))))))
)))))))........)))..)))))))).))))))))))))))))))).))))........))))).)).))).))
SIMILARITIES| miRBase tae-MIR1135: 2e-19 PMRD ata-miR1122: 2e-40 microPC miR1128: 3e-27 | UniProt no hits RFAM MIR1122: 3e-40 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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