ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTACTCCCTCCGTCCCGAATT miRNA* TTTGAGACGGAGGGAGTAGAA mismatches: 3 bulges: 0 |
pre-miRNA
TCTGAGACAATCACTATGATAGTACTCCCTCCGTCCCGAATTACTTATCGCTGAAATGGATGTATCTAGTTAGTGCTAGATACATCCATCTGAGCGACAA
GTATTTTGAGACGGAGGGAGTAGAATTTTACATGTAGACACAC
dot-bracket secondary structure
.........((((...))))..(((((((((((((.((((.(((((.(((((...(((((((((((((((....)))))))))))))))...))))).))
))).)))).)))))))))))))..........(((....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTGAGACAATCACTATGATAGTACTCCCTCCGTCCCGAATTACTTATCGCTGAAATGGATGTATCTAGTTAGTGCTAGATACATCCATCTGAGCGACAA
GTATTTTGAGACGGAGGGAGTAGAATTTTACATGTAGACACAC
dot-bracket secondary structure
.........((((...))))..(((((((((((((.((((.(((((.(((((...(((((((((((((((....)))))))))))))))...))))).))
))).)))).)))))))))))))..........(((....))).
SIMILARITIES| miRBase tae-MIR1136: 0.000000002 PMRD tae-miR1136: 0.000000002 microPC miR1439: 0.0000001 | UniProt no hits RFAM MIR1122: 0.0000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
