ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTAGTACTCCCTCCGTCCCG miRNA* GGACGGAGGGAGTAGTAGTTA mismatches: 2 bulges: 0 |
pre-miRNA
AATGTTCCACTAGTACTCCCTCCGTCCCGAATTACTTGTCGCAGAAATGAATAAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACACCCATTTC
CGCGACAAGTAATTTCGGACGGAGGGAGTAGTAGTTATCACC
dot-bracket secondary structure
........((((.((((((((((((((.((((((((((((((.((((((.........((.((((((((((...........))))))))))))))))))
.)))))))))))))).)))))))))))))).)))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AATGTTCCACTAGTACTCCCTCCGTCCCGAATTACTTGTCGCAGAAATGAATAAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACACCCATTTC
CGCGACAAGTAATTTCGGACGGAGGGAGTAGTAGTTATCACC
dot-bracket secondary structure
........((((.((((((((((((((.((((((((((((((.((((((.........((.((((((((((...........))))))))))))))))))
.)))))))))))))).)))))))))))))).)))).......
SIMILARITIES| miRBase tae-MIR1135: 6e-25 PMRD ata-miR1122: 7e-43 microPC miR1135: 9e-24 | UniProt no hits RFAM MIR1122: 1e-41 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
