ABOUT THIS RECORDspecies: Limnanthes alba
miRNA family: MIR420
source: miRNEST
Taxonomy by NCBI:
Limnanthes alba Limnanthes Limnanthaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAAATTAATCATGGAAATGTA miRNA* CATTTGTATCGGTGAATTTCAG mismatches: 4 bulges: 1 |
pre-miRNA
AAATACTCTATAGTTGAGCTTGAAATTAATCATGGAAATGTAGCTCATTTGTATCGGTGAATTTCAGTTTCATTTAGATTTTATA
dot-bracket secondary structure
......((((....((((.((((((((.((((((.(((((.....))))).))).))).)))))))).))))..)))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATACTCTATAGTTGAGCTTGAAATTAATCATGGAAATGTAGCTCATTTGTATCGGTGAATTTCAGTTTCATTTAGATTTTATA
dot-bracket secondary structure
......((((....((((.((((((((.((((((.(((((.....))))).))).))).)))))))).))))..)))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
