ABOUT THIS RECORDspecies: Linum usitatissimum
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Linum usitatissimum Linum Linaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGGGAACAGACAGAGCATGT miRNA* ATGCCCTGCCTCTTCCCTGGCC mismatches: 4 bulges: 1 |
pre-miRNA
TCGAGGAAAGAAGGAAGACGATAAAAAAAGAGGCTGGGAACAGACAGAGCATGTATAGAGCTTACTTACGGAAACCCTTTTGTTTTGACCCTTCCCATGCC
CTGCCTCTTCCCTGGCCTTTTTCCCTCTTCTCTTCCACCCTCTTTT
dot-bracket secondary structure
).((((...(((((((((........((((((((((((((.((.(((.(((((....(((.......((((((....))))))........))).))))).
))).)).))))).)))))))))...))))).))))...))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGAGGAAAGAAGGAAGACGATAAAAAAAGAGGCTGGGAACAGACAGAGCATGTATAGAGCTTACTTACGGAAACCCTTTTGTTTTGACCCTTCCCATGCC
CTGCCTCTTCCCTGGCCTTTTTCCCTCTTCTCTTCCACCCTCTTTT
dot-bracket secondary structure
).((((...(((((((((........((((((((((((((.((.(((.(((((....(((.......((((((....))))))........))).))))).
))).)).))))).)))))))))...))))).))))...))))....
SIMILARITIES| miRBase ptc-MIR408: 3.0E-5 PMRD ptc-miR408: 3.0E-5 microPC miR408: 3.0E-5 | UniProt no hits RFAM 8MIR408: 0.0005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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