ABOUT THIS RECORDspecies: Lolium perenne
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Lolium perenne Lolium Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGAGAGTGAGCAC miRNA* GCTCACTGCTCTATCTGTCAGCC mismatches: 0 bulges: 2 |
pre-miRNA
AGTGTGTGGAAGTTGACAGAAGAGAGTGAGCACCCATGGTGTTTCCTTTGCATCAAGGGGCGTGCCATGGAGCTATGCGTGCTCACTGCTCTATCTGTCAG
CCACTGATCA
dot-bracket secondary structure
).((..(((..(((((((((((((((((((((((((((((((.(((((((...))))))).))))))))).((...))))))))))).)))).))))))))
)..)))..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTGTGTGGAAGTTGACAGAAGAGAGTGAGCACCCATGGTGTTTCCTTTGCATCAAGGGGCGTGCCATGGAGCTATGCGTGCTCACTGCTCTATCTGTCAG
CCACTGATCA
dot-bracket secondary structure
).((..(((..(((((((((((((((((((((((((((((((.(((((((...))))))).))))))))).((...))))))))))).)))).))))))))
)..)))..))
SIMILARITIES| miRBase ssp-MIR156: 2.0E-8 PMRD zma-miR156i: 9.0E-8 microPC miR156: 6.0E-9 | UniProt no hits RFAM 6mir-156: 4.0E-7 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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