ABOUT THIS RECORDspecies: Lolium perenne
miRNA family: MIRf35
source: miRNEST
Taxonomy by NCBI:
Lolium perenne Lolium Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCATGGGACGGAGGGAGTA miRNA* CTCCCTCCGTCTCATGAAACG mismatches: 0 bulges: 0 |
pre-miRNA
AACAACATTATTATACTCCCTCCGTCTCATGAAACGTGTCTGAGATTTGTCAAAATTCGAATGTATCTAGATACTATTTAGTGGCTTGGTACATCTAAAT
TTAAGCAATCTCCGACATGTTTCATGGGACGGAGGGAGTATGTGTGATTAAG
dot-bracket secondary structure
.....(((...(((((((((((((((((((((((((((((.((((((.((..(((((...(((((((.((.((((....)))).)).)))))))...)))
))..)))))))).))))))))))))))))))))))))))))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACAACATTATTATACTCCCTCCGTCTCATGAAACGTGTCTGAGATTTGTCAAAATTCGAATGTATCTAGATACTATTTAGTGGCTTGGTACATCTAAAT
TTAAGCAATCTCCGACATGTTTCATGGGACGGAGGGAGTATGTGTGATTAAG
dot-bracket secondary structure
.....(((...(((((((((((((((((((((((((((((.((((((.((..(((((...(((((((.((.((((....)))).)).)))))))...)))
))..)))))))).))))))))))))))))))))))))))))).)))......
SIMILARITIES| miRBase no hits PMRD osa-miRf11182-akr: 0.0001 microPC no hits | UniProt no hits RFAM MIR1122: 0.0005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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