ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTATGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
ATGTGTATGTGCCTGGCTCCCTGTATGCCATTTGGAGAGCTCATCGAAACATCAATGATCTCTTTGGATGGCGTATGAGGAGCCAAGCATATTCCAT
dot-bracket secondary structure
..(((.((((((.(((((((.((((((((((((((((((.((((.((....)).)))).)))))))))))))))))).))))))).))))))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATGTGTATGTGCCTGGCTCCCTGTATGCCATTTGGAGAGCTCATCGAAACATCAATGATCTCTTTGGATGGCGTATGAGGAGCCAAGCATATTCCAT
dot-bracket secondary structure
..(((.((((((.(((((((.((((((((((((((((((.((((.((....)).)))).)))))))))))))))))).))))))).))))))..)))
SIMILARITIES| miRBase gma-MIR160: 7e-36 PMRD gma-miR160a: 7e-36 microPC miR160: 4e-28 | UniProt no hits RFAM mir-160: 2e-42 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
