ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTGCTCTCTCCGTCACC mismatches: 1 bulges: 2 |
pre-miRNA
TTTTTTTGTTTTCTGTTTTGGGACATAGAAATTGACAGAAGAGAGTGAGCACAGAGAGGCAAATTGTATAGGCATACACTATTGCTTTTGTGTGCTCACTG
CTCTCTCCGTCACCTTCCAGTGCCGGAAGTTTGCTTCATTCT
dot-bracket secondary structure
).(((((((.((((.....)))).))))))).((((.((((((((((((((((.((((((((..(((((....)))))...)))))))).)))))))))).
)))).)).)))).(((((......))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTTTGTTTTCTGTTTTGGGACATAGAAATTGACAGAAGAGAGTGAGCACAGAGAGGCAAATTGTATAGGCATACACTATTGCTTTTGTGTGCTCACTG
CTCTCTCCGTCACCTTCCAGTGCCGGAAGTTTGCTTCATTCT
dot-bracket secondary structure
).(((((((.((((.....)))).))))))).((((.((((((((((((((((.((((((((..(((((....)))))...)))))))).)))))))))).
)))).)).)))).(((((......))))).............
SIMILARITIES| miRBase tcc-MIR156g: 1.0E-25 PMRD vvi-miR156b: 8.0E-12 microPC miR156: 3.0E-14 | UniProt no hits RFAM 6mir-156: 2.0E-6 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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