ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATATGGCAGCTTCACC mismatches: 1 bulges: 1 |
pre-miRNA
TATAAAGTCTCGGTTCGTGCACCTGCAATAGTTGAAGCTGCCAGCATGATCTGAGCTTACCTTCTTGTAATAATGGTAAGAACAGATCATATGGCAGCTTC
ACCTGTTGAATGGAAGCATACAGACCCTAAT
dot-bracket secondary structure
)..........((((.((((.((..((((((.(((((((((((..((((((((..((((((.............))))))..)))))))).))))))))))
).))))))...))..))))...)))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATAAAGTCTCGGTTCGTGCACCTGCAATAGTTGAAGCTGCCAGCATGATCTGAGCTTACCTTCTTGTAATAATGGTAAGAACAGATCATATGGCAGCTTC
ACCTGTTGAATGGAAGCATACAGACCCTAAT
dot-bracket secondary structure
)..........((((.((((.((..((((((.(((((((((((..((((((((..((((((.............))))))..)))))))).))))))))))
).))))))...))..))))...)))).....
SIMILARITIES| miRBase lja-MIR167: 1.0E-56 PMRD lja-miR167: 1.0E-56 microPC miR167: 6.0E-34 | UniProt no hits RFAM 1MIR167_1: 3.0E-8 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST046166), lja-MIR167 from miRBase , miR167 from microPC , lja-miR167 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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