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ABOUT THIS RECORD
ID:
MNEST001500
species:
Manihot esculenta
miRNA family:
miR4249
source:
miRNEST
Taxonomy by NCBI:
Manihot esculenta
Manihot
Manihoteae
Crotonoideae
Euphorbiaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGAATTTGAGAAGTTGATGTG
miRNA*
ATTAATTTTCTGTCTCCGT
mismatches:
4
bulges:
1
View larger
pre-miRNA
CCTCCACTGCTTCTGTGTCTTC
ATTAATTTTCTGTCTCCGT
CCCAGCAAGGGGTGGGTCCCATCCATTTTGGCTTATAGATCATGGGTTTTGATTGGTTG
AATAAGCATGTATCAGCATGATCTAGAGTAGTGAAGTGATGGTATGAATCTCACAT
GGAATTTGAGAAGTTGATGTG
AGAAGGAAGTCTGGAAATG
dot-bracket secondary structure
..((((..((((((...(((((
(((((((((.((..((((.
(((.....)))(((((..(((((..(((..((((.(((((((((....(((((..(((.
....)))....))))))))))))))))))...)))..))))).......))))).)
)))...)).)))))))))).)
))).)))))).))))....
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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