miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001504
species: Manihot esculenta
miRNA family: MIRf1281
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTGTTTGGTTGCTGAGAAAA

miRNA*
 TTCTCAAAACTTTTTAGGGG

mismatches: 4
bulges: 1
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pre-miRNA
 TTTGAACTATCCCTGTTTGGTTGCTGAGAAAACGGATGCAAAGTAAAAATAAAAAAGAAAGTAAACCCACCACGCTGAAAAACAAGCAGGACCATGTCAT
CACAAGAAGTCTCACATTAATATTTAGCCAGAAACAACTCATGGCCCCATTAAAAGGAACGGTTGAATGCCATCATCCTGTATGAAGATATAAACAAGAA
CAAGACAGGTGACTTGGTTATTGTACTTGGTTTTCACTGCGACATATGGTGGGATTGCAGAACTTTTCAAGGTGTTGCTTTTCTCAAAACTTTTTAAGGT
GTTGATTTTCTCAAAACTTTTTAGGGGAAAAAAAA

dot-bracket secondary structure
.........((((((...((((..((((((((.(((...(((((((..((..(((((...((((.((((((((((.(((((.((((...(((((.(((((
(........(((....((.((((((.((((((......)).))))..(((....((((..(((.....)))....))))..))).)))))).))..))).
.......)))))).)))))......)))).)))))...))).....))))))).))))....)))))....)).))))))))))(((.((((....))))
.))).)))))))).))))...))))))........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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