ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIRf521
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTACAGTGTCTCTCCACAG miRNA* GTCAGAGGCGAGTTGTATC mismatches: 4 bulges: 2 |
pre-miRNA
CAAAAGCCAACTCTTTCAAGGATGTCAGAGGCGAGTTGTATCCATATACTACAGTGTCTCTCCACAGAGCCATTCCTATCCATGAAA
dot-bracket secondary structure
.............(((((.(((((..((.(((...((((......((((....))))......)))).))).))..))))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAAAAGCCAACTCTTTCAAGGATGTCAGAGGCGAGTTGTATCCATATACTACAGTGTCTCTCCACAGAGCCATTCCTATCCATGAAA
dot-bracket secondary structure
.............(((((.(((((..((.(((...((((......((((....))))......)))).))).))..))))).)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9LF50|MEX1_ARATH: 0.000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
