ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIRf661
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATGCCAAAGGAGATTTGCCC miRNA* GCAAAACCTCCATTGGCATGCA mismatches: 2 bulges: 1 |
pre-miRNA
TTGCATTACAGGGCAAAACCTCCATTGGCATGCAGCCACACTAAGATTCTCTATCCTTGTTGTGCATTCCTATAGTGTGCTCCATGCCAAAGGAGATTTG
CCCGGCAACACT
dot-bracket secondary structure
((((......(((((((..((((.((((((((.(((.((((((.............................))))))))).)))))))).)))).))))
))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGCATTACAGGGCAAAACCTCCATTGGCATGCAGCCACACTAAGATTCTCTATCCTTGTTGTGCATTCCTATAGTGTGCTCCATGCCAAAGGAGATTTG
CCCGGCAACACT
dot-bracket secondary structure
((((......(((((((..((((.((((((((.(((.((((((.............................))))))))).)))))))).)))).))))
))).))))....
SIMILARITIES| miRBase rco-MIR399c: 0.00000000009 PMRD ptc-miR399j: 0.0000000004 microPC miR399: 9e-48 | UniProt no hits RFAM mir-399: 0.0000000001 | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST045407) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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